Showing posts with label Neanderthals. Show all posts
Showing posts with label Neanderthals. Show all posts

Tuesday, February 11, 2014

Article: At 400,000 Years, Oldest Human DNA Yet Found Raises New Mysteries

At 400,000 Years, Oldest Human DNA Yet Found Raises New Mysteries
http://www.nytimes.com/2013/12/05/science/at-400000-years-oldest-human-dna-yet-found-raises-new-mysteries.html

2013 was packed with many new genetic findings shedding light on human prehistory.  The more studies that come out, the greater the complexity that is emerging.  For example, the genes of this person from 400,000 years ago in Spain were expected to be similar to Neanderthals and likely from the population ancestral to Neanderthals.  Lo and behold, the genome is more similar to the mysterious Denisovans who have thus far only been found in western Asia.  It may well be this person belonged to a population ancestral to both Denisovans and Neanderthals.

Tuesday, January 28, 2014

Article: Modern Humans Carry DNA from Neanderthal Viruses

Neanderthal virus DNA spotted hiding in modern humans
http://www.newscientist.com/article/dn24598-neanderthal-virus-dna-spotted-hiding-in-modern-humans.html

Friday, December 27, 2013

Articles: Funeral Practices among Neanderthals

Increasingly our ancestor/cousin species, the Neanderthals, seem a lot like...us.  Read this article about growing evidence the Neanderthals buried their dead.

Thursday, December 26, 2013

Article: Neanderthal Genome Shows Signs of Inbreeding

This article discusses a secondary finding from a new genetic research:  the genome of a Neanderthal woman shows signs of inbreeding.

Wednesday, December 25, 2013

Wednesday, October 30, 2013

Genetic Hybrids: Tales of 3 Lost Peoples Who Were Our Ancestors

This post is something I wrote for some friends:

As most of you know, one of my hobbies is my own take on genealogy:  the growing body of literature coming out of genetics studies that tell us about human prehistory.  There lately have been a bunch of new studies that I thought I'd put together for your reading pleasure:

Genetic Hybrids:  Tales of 3 Lost Peoples Who Were Our Ancestors:  New genetic evidence suggests that we modern humans are a hybrid species of sorts.  Most of our genome derives from our Homo sapien ancestors who evolved in Africa.  When the first modern humans left Africa, they encountered two other hominid species:  Neanderthals in western Asia and Europe; and Denisovans in Asia.  The discovery of the Denisovans was only announced in a 2010 paper after geneticists were stunned to find a finger bone and a few teeth -thought to be Neanderthal fossils- actually were a completely different yet related species.  Denisovans are named for the Denisova Cave in which these fossils were discovered.  This cave is in the Altai Mountains in Siberia.

Genetic evidence points to some interbreeding of Homo sapiens with Neanderthals and Denisovans.  2-6% of the DNA of non-Africans today appear to come from Neanderthals.  Indigenous sub-Saharan Africans usually do not show any Neanderthal DNA in their genomes.  It appears Homo sapiens' immune systems benefited from genes from our Neanderthal ancestors.   

One part of the diaspora out of Africa likely spread along the shores of the Indian Ocean from Africa to Arabia -> India -> Indonesia/Melanesia and finally Australia.  This group appears to have encountered the Denisovans because Melanesians have the highest percentage of Denisovan DNA in their genome (up to 6%).  Later settlers into Asia do not show much Denisovan ancestry. So the Denisovans either blended into a larger Homo sapiens population or died out before the next waves of Africans moved into Asia.  A 2013 study now suggests that Homo sapiens encountered the Denisovans not in Asia but in New Guinea or Australia after both groups successfully navigated the Indonesian sea barrier called Wallace's Line.

Finally, last year some geneticists published the results of a study of the DNA of various sub-Saharan African hunter-gatherer populations.  In their analysis they found evidence of an unknown third ancestral hominid who appears to have interbred with Homo sapiens.  Just as most Africans do not have Neanderthal or Denisovan ancestry, this mysterious third hominid species' DNA has so far only been found among these hunter-gatherer peoples in Africa. 

There are no fossil records for this 3rd species.  It doesn't even have a name yet.  One Stanford geneticist argues that the DNA doesn't point to a lost 3rd hominid people but reflects the DNA of our earliest Homo sapien ancestors.  For most African and all non-African humans, mutations have obliterated this original DNA.  So figuring out the answer to this is ongoing.

For Christmas I had my full genome analyzed (some people buy guns or handbags...I buy genetic tests...go figure).  My results came back last week and apparently my genome is 1.6% Neanderthal and an additional 1.6% Denisovan.  I was tickled to have a little bit of the rare Denisovan in me but a bit sad I wasn't more Neanderthal. :(



Sunday, October 27, 2013

Article: The Teeth Say the LCA of Modern Humans and Neanderthals Is Farther in the Past

Dental Study Takes Last Common Ancestor of Neanderthals and Homo Sapiens Back to 1 Million Years Ago

No Known Hominin Is Common Ancestor of Neanderthals and Modern Humans, Study Suggests

This study focuses on comparison of hominid teeth rather than genetics.  It argues the last common ancestor of Neanderthals and Homo sapiens lived at a much earlier date than currently postulated -closer to one million years ago.
Aida Gómez-Robles, José María Bermúdez de Castro, Juan-Luis Arsuaga, Eudald Carbonell, and P. David Polly. No known hominin species matches the expected dental morphology of the last common ancestor of Neanderthals and modern humans. PNAS, October 21, 2013 DOI: 10.1073/pnas.1302653110

Friday, October 25, 2013

Article and Discussion: Four Key Migratory Events Shape the European Gene Pool

As you all know, I am intrigued by the stories genetics is adding to human history.  The journal Science has a very interesting article that I will summarize and contextualize for folks.


By about 600,000 years ago, the hominid ancestor of Neanderthals leaves Africa and eventually settles Europe.  This ancient relative of modern humans will evolve into Neanderthals.

~40,000 years ago:  The first modern humans, Cro-Magnons, enter Europe -probably via Greece and the Danube Valley.  They encounter Neanderthals, and genetics point to some limited interbreeding.

~30,000 to ~25,000 years ago:  The last full Neanderthals die out.  The last skeleton of Neanderthals found to date is from a cave in Gibraltar.  

~28,000 to ~14,000 years ago:  The last Ice Age drives human and Neanderthal populations south to four refuges in a) Iberia, b) Italy, c) the Balkans, and d) the Ukraine.  A mutation arises in the population living in Iberia.  This mutation gives rise to the Rhesus negative factor in human blood (A-, B-, O-, and AB-).  Today  about 50% of Basque people carry this mutation with the frequency of the mutation dwindling the farther you get from the Pyrenees.  

~8,000 years ago:  agriculture arrives in Europe -again with people moving up the Danube Valley- via farmers immigrating from Turkey (Anatolia) and the Fertile Crescent.  These first European farmers appear genetically to be similar to modern Sardinians, residents of a large, relatively isolated island that is now part of Italy.  The genetics of Ötzi, the Ice Man whose body was found in a glacier on the Austrian-Italian border, places him as belonging to this group of Neolithic farmers.  The T and J mitochondrial haplogroups are also associated with these first farmers.  Note:  Ötzi and I are both in the T haplogroup.

~7,500 years ago:  Among the new Neolithic farmers in the Danube Valley a mutation occurs that will allow most Europeans to have lactose persistence, or the ability to digest dairy products after childhood.  

Now for where the paper starts off:

Geneticists and historians wondered if the first farmers assimilated the original Cro-Magnon hunter-gatherers, killed them off, or diluted their genetic contributions by filling Europe with larger families supported by agriculture. Instead, the researchers -Brandt et al.-  found some really unexpected and fascinating things by comparing modern European populations' DNA with the DNA from skeletons found in central Germany.  These German skeletons cover 4,000 years of history from the first farmers to about 3,500 years ago during the Bronze Age.  What did they find?

a. For 2,000 years after the Neolithic farmers arrived, there appears to have been limited interbreeding between the farmers and the hunter-gatherers.  The farmers appear to have been successful with their numbers steadily growing.  It is interesting to ponder what social mechanisms kept two populations from intermarrying for two millennia.  

b. ~7000 years ago:  About a 1,000 years after the farmers arrived, their overall percentage in the gene pool appears to decline and the hunter-gatherers and their genes make a comeback.  This may have resulted from climate change or disease.  Adapting Near Eastern plants and farming to cooler Europe surely must have entailed crop failures and setbacks.  The rapid spread of the lactose persistence gene points to the importance of dairy.  The ability to digest it conferred survival when those without it starved.  Moreover, most infectious diseases in humans arise from pathogens that jump the species boundary and are more likely to infect people living with livestock.  

c. ~4,800 years ago:  A new migration of people from the Russian steppes arrives.  These people have horses and carts.  They decorate their pottery in a distinctive design giving them the name the Corded Ware people.  They likely are the first proto-Indo-European speakers, and thus are the linguistic ancestors of almost every European language spoken today except Basque, Hungarian and Finnish.

d. ~4,500 years ago:  A fourth migration starts in Portugal around modern Lisbon.  These people, the Bell-Beaker people, work copper and appear to have a culture built around trade.  They make pottery in the shape of wide-lipped, upside-down bells and build megalithic stone monuments.  At first they spread along the Atlantic and Mediterranean coasts.  These first maritime settlements include modern Brittany in northwest France.  From there the traders appear to follow existing, ancient trading routes up the valley of the Seine to the Rhine and then into the heart of Germany.  In Germany the Bell-Beaker traders mix with the a) hunter-gatherers, b) farmers, and c) Indo-European speakers.  They bring with them the H mtDNA haplogroup, the most common maternal lineage in Europe today.

The authors say Europeans' -and European-Americans'- DNA is a more complex story than Neolithic farmers simply replacing Paleolithic hunter-gatherers.  Instead, today's European gene pool appears to be a mix of these four migrations plus a little Neanderthal, Denisovan, and some later additions from outside Europe.





Guido Brandt, Wolfgang Haak, Christina J. Adler, Christina Roth, Anna Szécsényi-Nagy, Sarah Karimnia, Sabine Möller-Rieker, Harald Meller, Robert Ganslmeier, Susanne Friederich, Veit Dresely, Nicole Nicklisch, Joseph K. Pickrell, Frank Sirocko, David Reich, Alan Cooper, Kurt W. Alt, the Genographic Consortium. Ancient DNA Reveals Key Stages in the Formation of Central European Mitochondrial Genetic Diversity. Science, 2013 DOI: 10.1126/science.1241844